# Pluto Bio Reviews **Vendor:** Pluto Bioinformatics **Category:** [Scientific Data Management Systems (SDMS)](https://www.g2.com/categories/scientific-data-management-system-sdms) **Average Rating:** 4.8/5.0 **Total Reviews:** 14 ## About Pluto Bio Pluto is a collaborative computational biology platform that empowers scientific teams to manage and analyze data from next-generation sequencing (NGS) and other -omics assays. Pluto offers a modern, biology-focused experience and one-of-a-kind scientific "canvas" that allows you to tell your unique scientific story, with no coding required. ## Pluto Bio Pros & Cons **What users like:** - Users highlight the **user-friendly data analysis** of Pluto Bio, enabling intuitive handling of complex bioinformatics tasks. (3 reviews) - Users appreciate the **end-to-end functionality** of Pluto Bio, simplifying complex analyses and enhancing productivity. (3 reviews) - Users value the **comprehensive modules** of Pluto Bio for their seamless, end-to-end data processing and analysis. (2 reviews) - Users appreciate the **data accuracy** of Pluto Bio, enabling reliable analysis and quality control with minimal effort. (2 reviews) - Users praise the **ease of learning** with Pluto Bio, enabling novices to conduct complex analyses effortlessly. (2 reviews) - Efficiency (2 reviews) - Customer Support (1 reviews) - Data Management (1 reviews) - Ease of Use (1 reviews) - Lab Automation (1 reviews) **What users dislike:** - Users seek more **tutorials and experiment types** to enhance usability and understanding of Pluto Bio's features. (1 reviews) - Users seek improved **documentation and tutorials** for interpreting reports and understanding quality control concerns. (1 reviews) - Users find the **poor notification system** challenging, making it hard to identify quality control issues quickly. (1 reviews) ## Pluto Bio Reviews ### 1. Bulk RNA seq analysis and figure plotting on Pluto **Rating:** 5.0/5.0 stars **Reviewed by:** Queeny D. | Mid-Market (51-1000 emp.) **Reviewed Date:** August 03, 2023 **What do you like best about Pluto Bio?** Pluto makes it easy for me to organize my data and run bioinformatics analyses, without having to code. Pluto also lets me create good representative figures on my own. It like that all my data can be saved at the same place and gives me the flexibility to create more plots and interpretations as I analyze. I also like that they have a responsive chat feature that respond to my queries quickly **What do you dislike about Pluto Bio?** It would help to run more types of statistical analyses on Pluto. **What problems is Pluto Bio solving and how is that benefiting you?** Pluto lets me upload bulk RNA sequencing data and generate DEG profiles that I would otherwise have to do on R or Matlab. It allows me to not have to code. I also like that you can run GEne set enrichment analysis on the Pluto platform which helps make sense of your data. ### 2. User friendly interface **Rating:** 5.0/5.0 stars **Reviewed by:** Sireesh Kumar T. | Enterprise (> 1000 emp.) **Reviewed Date:** August 14, 2023 **What do you like best about Pluto Bio?** Our team having little knowledge on how to analyze transcriptome data using complex programming languages (R, Python). Pluto makes it easy for any of us to look at our own data and make barplots, volcano plots, etc. I frequently come back and create new figures/comparitive analysis on my data sets later on when I need a new plot. **What do you dislike about Pluto Bio?** I would like to see even more analysis types to choose from in Pluto. **What problems is Pluto Bio solving and how is that benefiting you?** I can upload raw RNA-seq data and analyze it to generate the figures I need for my lab meeting presentations and publications. Pluto's scientists are responsive when helping with biological interpretation or other questions and have provided multiple training sessions with our teams. ### 3. My review of Pluto for tissue engineering **Rating:** 4.0/5.0 stars **Reviewed by:** Thomas R. | Small-Business (50 or fewer emp.) **Reviewed Date:** May 23, 2023 **What do you like best about Pluto Bio?** Pluto is useful for data sharing and visualisation, particularly for the 'simple' biological assays I do. I can integrate multiple assays in one easy place, and add both images and text. It's cloud-based, so I can work on my data from anywhere, even my phone (which I have done before!). **What do you dislike about Pluto Bio?** The barrier to usability is quite high, I haven't been able to onboard as many colleagues as I would have liked. The graphs aren't publication ready: When values are below 1, no decimals are displayed. Legends are not editable for clarity and can't include units. In the Sample Data formatting, Pluto can't pull numerical values if text is included. This makes adding 'targets' like concentrations (5uM for example) impossible. No Bliss modelling or fitting curves for IC50s. **What problems is Pluto Bio solving and how is that benefiting you?** We generate a lot of data, generally tied to one patient. Pluto allows me to integrate different data sources in one place and share that data with my colleagues. ### 4. A truly end to end bioinformatics platform **Rating:** 5.0/5.0 stars **Reviewed by:** Verified User in Biotechnology | Enterprise (> 1000 emp.) **Reviewed Date:** August 06, 2023 **What do you like best about Pluto Bio?** I am an experienced bioinformatics researcher that has personally tried numerous analysis and visualization platforms across several -omics types. A huge advantage of this platform is that it is fully end to end. I haven’t encountered another platform that can process large sequencing files, perform quality control, and generate interpretable and publication-quality analysis. I have shared data through this platform (which is quite easy) to investigators with limited bioinformatics experience. Despite that shortcoming, the platform is so intuitive that they are easily capable of understanding the analysis to that point and are quickly capable of generating new analyses. **What do you dislike about Pluto Bio?** Researchers always want more features and analysis so I would just like to see continued growth. I’ve used this platform for over a year and I have been impressed with the continued growth and development. New experiments and analyses are frequently added, keeping this platform up to date with what is needed for bioinformatics analysis but continued development will be needed. Extensive quality control is performed. However, because so much information is generated, it can be difficult to quickly know if there are issues with the data. QC notifications could be one area for improvement. **What problems is Pluto Bio solving and how is that benefiting you?** A major problem with the field of bioinformatics and related analysis is that it is very complex and can be difficult to learn. Pluto seems to be all about empowerment. They have developed an intuitive and accurate platform that brings bioinformatics analysis to anyone’s fingertips. An additional problem that is solved is related to the difficulty of setting up powerful computing infrastructure with the tools to perform bioinformatics. Pluto’s cloud infrastructure eases both issues and consistently processes large files quickly with trusted software. ### 5. Bulk RNA seq analysis and figures in Pluto **Rating:** 5.0/5.0 stars **Reviewed by:** Payton M. | Small-Business (50 or fewer emp.) **Reviewed Date:** August 07, 2023 **What do you like best about Pluto Bio?** The most helpful part of Pluto is the methods section that comes with each figure. It was so easy to write the manuscript when every figure has exactly what was done to make it. **What do you dislike about Pluto Bio?** There really was not anything I disliked, the only thing I would like to see is more options to display data. **What problems is Pluto Bio solving and how is that benefiting you?** Our group has had only a little experience with bioinformatics although Pluto explains everything extremely well and allows us to fully understand the processes used. Pluto also makes the analysis part much easier with guides throughout. ### 6. Great platform for biologists and informaticians with minimal hands on time **Rating:** 5.0/5.0 stars **Reviewed by:** Verified User in Research | Small-Business (50 or fewer emp.) **Reviewed Date:** August 04, 2023 **What do you like best about Pluto Bio?** Pluto makes running the more mundane processing parts of NGS analysis easy with very little hands on time from the user. As someone who is a bioinformatician, I do not enjoy running the basic parts of informatics analyses (such as QC and generation of counts matrices), and Pluto allows me to spend a couple minutes uploading the data so I can focus on the more intricate parts of downstream analysis analyses and on software development. They provide very thorough and comprehensive QC metrics, so that if I need to modify or rerun the pipeline, I can easily do that by making a copy of the experiment, changing a couple of parameters, and re-running based on the QC issues I see. I can seriously do this in under 5 minutes of my time. I also think the ability to import GEO studies from fastq through analysis is very powerful and saves me a lot of time trying to download fastqs and dealing with internet bandwidth issues from SRA and re-analyze them to be concordant with the pipelines and parameters I want to use; the platform makes running reproducible analysis much more steamlined. **What do you dislike about Pluto Bio?** I would like to see either more tutorials/docs/video, of how to interpret different portions of the multiqc report and example of when I should be concerned about the QC. Additionally, more experiment types would be great -- some type of streamlined variant calling pipeline (particularly for cancer studies) or scRNA-seq analsis would be nice. **What problems is Pluto Bio solving and how is that benefiting you?** Pluto is solving my time management problem in that I can spend more time developing software or code for new analyses types instead of spending my time managing pipelines. ### 7. Bioinformatics figures in Pluto **Rating:** 5.0/5.0 stars **Reviewed by:** Verified User in Biotechnology | Small-Business (50 or fewer emp.) **Reviewed Date:** August 14, 2023 **What do you like best about Pluto Bio?** It's a wet-lab scientist-friendly platform that reduces steps toward the actual analysis! And staff from pluto are available and pretty responsive for troubleshoot whenever needed **What do you dislike about Pluto Bio?** More webinars would be appreciated considering the diverse aspects you can explore on the platform. And if it can reflect single cell technology which becomes one of the standard, it would be awesome **What problems is Pluto Bio solving and how is that benefiting you?** It is well-guided from raw data upload to final figure generation. Also good to organize dataset especially when you have multiple assays done for one project. And pluto's scientists are keep us posted and updating features that we'd ask for! ### 8. Good platform for sharing data **Rating:** 3.5/5.0 stars **Reviewed by:** Verified User in Biotechnology | Small-Business (50 or fewer emp.) **Reviewed Date:** May 23, 2023 **What do you like best about Pluto Bio?** Pluto allows collaboration across teams. It is very helpful to have all data pertaining to a certain sample visualised in one place. It is a great addition to ELN software where the focus is on protocols and record-keeping rather than visualisation and collaboration. **What do you dislike about Pluto Bio?** When adding new data to Pluto for technical repeats of experiments, a completely new file needs to be uploaded and graphs need to be remade which takes a bit of extra time. Additionally, decimals are not displayed in graphs on the y-axis. **What problems is Pluto Bio solving and how is that benefiting you?** Data presentation, visualisation and collaboration are improved by using Pluto. It saves time having all data from different internal collaborators in one place and since graphs are visualised in similar ways, interpretation is easier. ### 9. Early user and still a fan **Rating:** 5.0/5.0 stars **Reviewed by:** Holger R. | Enterprise (> 1000 emp.) **Reviewed Date:** August 02, 2023 **What do you like best about Pluto Bio?** One stop shop for all my RNA sequencing needs without the need to be a bioinformatician. **What do you dislike about Pluto Bio?** Nothing really. Perhaps early on some things had bugs, but their team has been awesome in fixing it so its not a problem anymore... **What problems is Pluto Bio solving and how is that benefiting you?** manage large NGS data sets ### 10. Pluto is an amazing tool **Rating:** 5.0/5.0 stars **Reviewed by:** Austin K. | PhD Biomedical Sciences -- Molecular Cell Biology , Small-Business (50 or fewer emp.) **Reviewed Date:** August 02, 2023 **What do you like best about Pluto Bio?** I love how easy it is to create a graph from bulk RNAseq data. **What do you dislike about Pluto Bio?** I wish there was a delete button for projects made by mistake in the UI. **What problems is Pluto Bio solving and how is that benefiting you?** Pluto helps me analyze what genes my cells of interest are transcribing with ease. ### 11. An excellent tool **Rating:** 5.0/5.0 stars **Reviewed by:** Verified User in Biotechnology | Small-Business (50 or fewer emp.) **Reviewed Date:** August 14, 2023 **What do you like best about Pluto Bio?** As a graduate student, Pluto has helped me immensely. Not only does it allow me to make interrogations re: multiple datasets but it also helps me understand basic concepts of big data analysis. The interface is very easy to use and requires very little training. **What do you dislike about Pluto Bio?** Sometimes the interface can be slow when doing analyses with rnaseq data. **What problems is Pluto Bio solving and how is that benefiting you?** Analysis of genes to predict Microglia senescence in aging and neurodegeneration ### 12. Bioinformatics Analysis in Pluto **Rating:** 5.0/5.0 stars **Reviewed by:** Priyanka S. | Mid-Market (51-1000 emp.) **Reviewed Date:** August 14, 2023 **What do you like best about Pluto Bio?** The Pluto interface is very user friendly and makes it easy for someone without extensive Bioinformatics experience to conduct analysis, create plots and understand our data. **What do you dislike about Pluto Bio?** I would like to see more anlaysis features introduced. **What problems is Pluto Bio solving and how is that benefiting you?** Pluto provides Bioinformatics solutions for scientists without extensive computational biology experience. ### 13. Pluto bio platforms for Genomic data analysis **Rating:** 5.0/5.0 stars **Reviewed by:** Verified User in Biotechnology | Enterprise (> 1000 emp.) **Reviewed Date:** May 16, 2023 **What do you like best about Pluto Bio?** 1. Highly user-friendly platform 2. Fast turnaround time for CUT and RUN and ChIP-seq data analysis. 3. Ability to access all the mapped data, QC and differential analysis. 4. Complete package for sequencing data analysis. **What do you dislike about Pluto Bio?** Would like to see some more ability to combine multiple data set for analysis. **What problems is Pluto Bio solving and how is that benefiting you?** Pluto helps us in analyzing large biological datasets in a user-friendly GUI. The pluto platform helps us in maximizing our productivity and generating reliable, reproducible analysis. ### 14. Bioinformatics analysis and figures for Research work **Rating:** 5.0/5.0 stars **Reviewed by:** Verified User in Research | Small-Business (50 or fewer emp.) **Reviewed Date:** August 14, 2023 **What do you like best about Pluto Bio?** I recently started using Pluto. It is very good for beginners who don't have bioinformatic analysis experience previously. I am getting instant help from the Pluto team once I have stuck with the analysis. **What do you dislike about Pluto Bio?** Maybe I need more time to explore Pluto. The team should provide more analysis, (eg; HiChip, DRIp seq,) and also should conduct webinars and more pieces training. **What problems is Pluto Bio solving and how is that benefiting you?** Cut and Run. It is very helpful understand. - [View Pluto Bio pricing details and edition comparison](https://www.g2.com/products/pluto-bio/reviews?section=pricing&secure%5Bexpires_at%5D=2026-06-05+16%3A03%3A45+-0500&secure%5Bsession_id%5D=3fbdcdd1-3db0-486e-a964-411474105550&secure%5Btoken%5D=21e5824bd2b94032734f61528e2e611b834b52eb782624469c47d4bf84a52775&format=llm_user) ## Pluto Bio Features **Drug Processing** - Data Sourcing - Adaptive Workflows - High Throughput Screening (HTS) **Data Management** - Document Management System - Lab Systems Integration - Operational Database - Query and Search - Audit Security - Variety File Support - Library Collections - Metadata Management **Operations** - Data Management - Task Automation **Drug Development** - Simulation and Modeling - High Content Screening (HCS) - Empirical Scoring - Docking - Fragment-Based Screening (FBS) **Agentic AI - Scientific Data Management System (SDMS)** - Cross-system Integration - Decision Making **Technology** - Machine Learning - Artificial Intelligence **Activity Management** - Product-To-Market Management - Regulatory Adherence - Process Automation ## Top Pluto Bio Alternatives - [SciNote](https://www.g2.com/products/scinote/reviews) - 4.2/5.0 (303 reviews) - [Labguru ELN LIMS](https://www.g2.com/products/labguru-eln-lims/reviews) - 4.6/5.0 (165 reviews) - [STARLIMS](https://www.g2.com/products/starlims/reviews) - 4.5/5.0 (156 reviews)